Evolution is
an on-going process. Therefore, it can be studied
experimentally in organisms with suitably short
generations. To that end, we have propagated 12
populations of E. coli in a simple environment for over 50,000
generations. Two goals of this long-term experiment are
to examine the repeatability of evolution and to characterize
the dynamics of evolution. We have quantified the extent
of adaptation by natural selection, identified many examples
of parallel evolution, and observed the origin of a function
that transcends the usual definition of E. coli as a
species. We have used new technologies to sequence whole
genomes to find all of the mutations present in temporal
series of clones from some populations. These genomic
data provide new insights into the coupling of phenotypic and
genetic evolution, and into the role of complex mutations in
the emergence of key innovations.